Our systems can be found at...


University of California, Berkeley

Cambridge MRC

Massachusetts Institute of Technology

Gladstone Institute

IMP Vienna

IST Vienna

Sainsbury Wellcome Centre

University of Louisville

University of Seville

Salk Institute for Biological Studies

Newcastle University

University of Wyoming

New York University

Northwestern University


Boston University

McGill University

University of Michigan

University of Minnesota

University of California, San Francisco

University of California, Los Angeles

University of California, Irvine

University of Southern California

California Institute of Technology

Washington University

University of Texas, Austin

Carnegie Mellon University

Rutgers University, New Brunswick

Rutgers University, Newark

University of Freiburg, Germany

National Neuroscience Institute, Singapore

Harvard Medical School

Yale University

Johns Hopkins University

Duke University

University of North Carolina, Chapel Hill

University of Utah

Stanford University

University of Oregon

University College London, UK

IMEC, Belgium

Netherlands Institute for Neuroscience

Hebrew University of Jerusalem, Israel

University of Chicago




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Garcia-Junco-Clemente, Pablo, Taruna Ikrar, Elaine Tring, Xiangmin Xu, Dario L. Ringach, and Joshua T. Trachtenberg. “An Inhibitory Pull-Push Circuit in Frontal Cortex.” Nature Neuroscience 20, no. 3 (March 2017): 389–92. https://doi.org/10.1038/nn.4483.

Hainmueller, Thomas, and Marlene Bartos. “Parallel Emergence of Stable and Dynamic Memory Engrams in the Hippocampus.” Nature 558, no. 7709 (June 2018): 292. https://doi.org/10.1038/s41586-018-0191-2.

Han, Xu, Ben Vermaercke, and Vincent Bonin. “Segregated Encoding of Spatiotemporal Features in the Mouse Visual Cortex.” BioRxiv, October 12, 2018, 441014. https://doi.org/10.1101/441014.

Heffley, William, Eun Young Song, Ziye Xu, Benjamin Taylor, Mary Anne Hughes, Andrew McKinney, Mati Joshua, and Court Hull. “Coordinated Cerebellar Climbing Fiber Activity Is Gated by Behavioral Context in a Voluntary Motor Regime.” BioRxiv, March 13, 2018, 281055. https://doi.org/10.1101/281055.

Heffley, William, Eun Young Song, Ziye Xu, Benjamin N. Taylor, Mary Anne Hughes, Andrew McKinney, Mati Joshua, and Court Hull. “Coordinated Cerebellar Climbing Fiber Activity Signals Learned Sensorimotor Predictions.” Nature Neuroscience 21, no. 10 (October 2018): 1431. https://doi.org/10.1038/s41593-018-0228-8.

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Jimenez, Luis O., Elaine Tring, Joshua T. Trachtenberg, and Dario L. Ringach. “Local Tuning Biases in Mouse Primary Visual Cortex.” Journal of Neurophysiology 120, no. 1 (April 18, 2018): 274–80. https://doi.org/10.1152/jn.00150.2018.

“Untangling Cortical Maps in Mouse Primary Visual Cortex.” BioRxiv, January 21, 2017, 102079. https://doi.org/10.1101/102079.

Jin, Miaomiao, Jeffrey M. Beck, and Lindsey Glickfeld. “Neuronal Adaptation Reveals a Suboptimal Decoding of Orientation Tuned Populations in the Mouse Visual Cortex.” BioRxiv, October 3, 2018, 433722. https://doi.org/10.1101/433722.

Kandler, Steffen, Dun Mao, Bruce L. McNaughton, and Vincent Bonin. “Encoding of Tactile Context in the Mouse Visual Cortex.” BioRxiv, May 2, 2018, 199364. https://doi.org/10.1101/199364.

Katrien, Mols, Prodanov Dimiter, and Bonin Vincent. “Scale-Space Based Segmentation of Cells in Functional Two-Photon in Vivo Images.” Frontiers in Neuroinformatics 7 (2013). https://doi.org/10.3389/conf.fninf.2013.10.00033.

Liang, Liang, Alex Fratzl, Glenn Goldey, Rohan N. Ramesh, Arthur U. Sugden, Josh L. Morgan, Chinfei Chen, and Mark L. Andermann. “A Fine-Scale Functional Logic to Convergence from Retina to Thalamus.” Cell 173, no. 6 (May 31, 2018): 1343-1355.e24. https://doi.org/10.1016/j.cell.2018.04.041.

Livneh, Yoav, Rohan n. Ramesh, christian R. Burgess, Kirsten M. Levandowski, Joseph c. Madara, henning Fenselau, Glenn J. Goldey, et al. “Homeostatic Circuits Selectively Gate Food Cue Responses in Insular Cortex.” Nature 546, no. 7660 (June 29, 2017): 611–16. https://doi.org/10.1038/nature22375.

Madisen, Linda, Aleena R. Garner, Daisuke Shimaoka, Amy S. Chuong, Nathan C. Klapoetke, Lu Li, Alexander van der Bourg, et al. “Transgenic Mice for Intersectional Targeting of Neural Sensors and Effectors with High Specificity and Performance.” Neuron 85, no. 5 (March 4, 2015): 942–58. https://doi.org/10.1016/j.neuron.2015.02.022.

Mao, Dun, Steffen Kandler, Bruce L. McNaughton, and Vincent Bonin. “Sparse Orthogonal Population Representation of Spatial Context in the Retrosplenial Cortex.” Nature Communications 8 (August 15, 2017). https://doi.org/10.1038/s41467-017-00180-9.

Mineault, Patrick J., Elaine Tring, Joshua T. Trachtenberg, and Dario L. Ringach. “Enhanced Spatial Resolution During Locomotion and Heightened Attention in Mouse Primary Visual Cortex.” The Journal of Neuroscience 36, no. 24 (June 15, 2016): 6382–92. https://doi.org/10.1523/JNEUROSCI.0430-16.2016.

Mols, Katrien, Silke Musa, Bart Nuttin, Liesbet Lagae, and Vincent Bonin. “In Vivo Characterization of the Electrophysiological and Astrocytic Responses to a Silicon Neuroprobe Implanted in the Mouse Neocortex.” Scientific Reports 7 (November 15, 2017). https://doi.org/10.1038/s41598-017-15121-1.

Nelson, Anders, and Richard Mooney. “The Basal Forebrain and Motor Cortex Provide Convergent yet Distinct Movement-Related Inputs to the Auditory Cortex.” Neuron 90, no. 3 (May 4, 2016): 635–48. https://doi.org/10.1016/j.neuron.2016.03.031.

Pluta, Scott R., Evan H. Lyall, Greg I. Telian, Elena Ryapolova-Webb, and Hillel Adesnik. “Surround Integration Organizes a Spatial Map during Active Sensation.” Neuron 94, no. 6 (June 21, 2017): 1220-1233.e5. https://doi.org/10.1016/j.neuron.2017.04.026.

Ramesh, Rohan N., Christian R. Burgess, Arthur U. Sugden, Michael Gyetvan, and Mark L. Andermann. “Intermingled Ensembles in Visual Association Cortex Encode Stimulus Identity or Predicted Outcome.” Neuron, October 11, 2018. https://doi.org/10.1016/j.neuron.2018.09.024.

Ringach, Dario L., Patrick J. Mineault, Elaine Tring, Nicholas D. Olivas, Pablo Garcia-Junco-Clemente, and Joshua T. Trachtenberg. “Spatial Clustering of Tuning in Mouse Primary Visual Cortex.” Nature Communications 7 (August 2, 2016): 12270. https://doi.org/10.1038/ncomms12270.

Salinas, Kirstie J., Dario X. Figueroa Velez, Jack H. Zeitoun, Hyungtae Kim, and Sunil P. Gandhi. “Contralateral Bias of High Spatial Frequency Tuning and Cardinal Direction Selectivity in Mouse Visual Cortex.” The Journal of Neuroscience 37, no. 42 (October 18, 2017): 10125–38. https://doi.org/10.1523/JNEUROSCI.1484-17.2017.

Schneider, David M., Janani Sundararajan, and Richard Mooney. “A Cortical Filter That Learns to Suppress the Acoustic Consequences of Movement.” Nature 561, no. 7723 (September 2018): 391. https://doi.org/10.1038/s41586-018-0520-5.

Socha, Karolina, Matt Whiteway, Daniel Butts, and Vincent Bonin. “Behavioral Response to Visual Motion Impacts Population Coding in the Mouse Visual Thalamus.” BioRxiv, August 1, 2018, 382671. https://doi.org/10.1101/382671.

Tanaka, Masashi, Fangmiao Sun, Yulong Li, and Richard Mooney. “A Mesocortical Dopamine Circuit Enables the Cultural Transmission of Vocal Behaviour.” Nature 563, no. 7729 (November 2018): 117. https://doi.org/10.1038/s41586-018-0636-7.

Tring, Elaine, and Dario Ringach. “On the Subspace Invariance of Population Responses.” BioRxiv, July 4, 2018, 361568. https://doi.org/10.1101/361568.

Voigts, Jakob, and Mark Harnett. “An Animal-Actuated Rotational Head-Fixation System for 2-Photon Imaging during 2-d Navigation.” BioRxiv, March 1, 2018, 262543. https://doi.org/10.1101/262543.

Wekselblatt, Joseph B., Erik D. Flister, Denise M. Piscopo, and Cristopher M. Niell. “Large-Scale Imaging of Cortical Dynamics during Sensory Perception and Behavior.” Journal of Neurophysiology 115, no. 6 (June 1, 2016): 2852–66. https://doi.org/10.1152/jn.01056.2015.