Basic Analysis

The functions to access the data are documented in the scanbox blog:

https://scanbox.wordpress.com/

How to read the data stored by Scanbox is described here -- 

https://scanbox.wordpress.com/2014/08/04/reading-raw-data-with-sbxread/

The basic processing pipeline is described here -- 

https://scanbox.wordpress.com/2014/07/31/basic-processing-pipeline/

How to integrate your system with other external events/stimulation is described here -- 

https://scanbox.wordpress.com/2014/06/09/scanbox-system-integration/

https://scanbox.wordpress.com/2016/01/22/ttl-synchronization/

Non-rigid deformation for image registration/alignment

https://xcorr.net/2014/10/03/sorting-calcium-imaging-signals/